PhD Diego Darriba López  

Profesor contratado doutor (PC-DR)

Department Computer Engineering
Knowledgment area Computer Architecture and Technology
Research  Research group Grupo de Arquitectura de Ordenadores
Research lines Bioinformatics Phylogenetics High Performance Computing
Contacto UDC directory
Orcid id0000-0001-5482-3932 ResearcherIDN-7273-2019 Scopus37088309000

Teaching

Subjects taught

This section shows the teaching given in degrees, masters and other officers studies in last 6 years.

Subject and involved studies Distance hours Total hours
Master's Dissertation
Master in High Performance Computing
0 3.5
Subject and involved studies Distance hours Total hours
Advanced Parallel Programming 0 10
Computer Structure 0 135
Concurrency and Parallelism 0 90
Final Year Dissertation. Mention in Information Technology 0 5
Final Year Dissertation. Mention in Software Engineering 0 2.5
Fundamentals of Computers 0 0
Master's Dissertation 0 1
Work Placement 0 1
Subject and involved studies Distance hours Total hours
Advanced Parallel Programming
Master in High Performance Computing
0 10
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
0 180
Concurrency and Parallelism
Degree in Computer Engineering
0 60
Final Year Dissertation. Mention in Computer Engineering
Degree in Computer Engineering
0 8
Subject and involved studies Distance hours Total hours
Advanced Parallel Programming
Master in High Performance Computing
6 16
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
Master's in Computer Engineering
0 129
Concurrency and Parallelism
Degree in Computer Engineering
0 85
Subject and involved studies Distance hours Total hours
Advanced Parallel Programming
Master in High Performance Computing
6 16
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
0 61
Concurrency and Parallelism
Degree in Computer Engineering
0 75
Fundamentals of Computers
Degree in Data Science and Engineering
0 45
Subject and involved studies Distance hours Total hours
Advanced Parallel Programming
Master in High Performance Computing
0 10
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
0 83
Concurrency and Parallelism
Degree in Computer Engineering
0 75
Fundamentals of Computers
Degree in Data Science and Engineering
0 45

Defined tutoring by teacher for 2023/2024 academic course.

Faculty of Computer Science

Quarter Day Site
1st quarter Monday
18:00 a 20:00
D3.10 Área Científica
1st quarter Thursday
11:30 a 13:30
D3.10 Área Científica
1st quarter Thursday
18:00 a 20:00
D3.10 Área Científica
2nd quarter Monday
11:30 a 13:30
D3.10 Área Científica
2nd quarter Wednesday
10:30 a 12:30
D3.10 Área Científica
2nd quarter Friday
17:30 a 19:30
D3.10 Área Científica

EOG works and final master thesis directed

Directed or codirected by current teacher since 2013 year.

Research results

Select merit type and year to query research merits.

Arquitecturas, Frameworks y Aplicaciones de la Computación de Altas Prestaciones

Funding entity Ministerio de Ciencia e Innovación
Main researches TOURIÑO DOMÍNGUEZ JUAN (IP1) / RODRIGUEZ ÁLVAREZ GABRIEL (IP2)
Type Proyecto Programas Nacionales
Dates From 01/09/2023 to 31/08/2026

AXUDAS PARA A CONSOLIDACIÓN E ESTRUTURACIÓN DE UNIDADES DE INVESTIGACIÓN COMPETITIVAS.GRC 2021

Funding entity Consellería de Cultura, Educación e Ordenación Universitaria
Main researches Juan Touriño Domínguez
Type Proyecto Programas Autonomicos
Dates From 01/01/2021 to 20/11/2024

Desafíos Actuales en HPC: Arquitecturas, Software y Aplicaciones

Funding entity Ministerio de Ciencia e Innovación
Main researches Touriño Dominguez, Juan e Doallo Biempica, Ramón
Type Proyecto Programas Nacionales
Dates From 01/06/2020 to 31/05/2023

NUEVOS DESAFIOS EN COMPUTACION DE ALTAS PRESTACIONES: DESDE ARQUITECTURAS HASTA APLICACIONES (II)

Funding entity Ministerio de Economía y Competitividad (MINECO)
Main researches Ramón Doallo Biempica, Juan Touriño Domínguez
Type Proyecto Programas Nacionales
Dates From 30/12/2016 to 29/12/2019

High-Performance Embedded Architectures and Compilation Network of Excellence, HiPEAC-3 NoE

Funding entity Union Europea
Main researches Koen De Bosschere
Type Proyecto UE
Dates From 01/02/2012 to 31/01/2016

Arquitecturas, Sistemas y Herramientas para Computación de Altas Prestaciones

Funding entity Ministerio de Economía y Competitividad
Main researches Ramón Doallo Biempica
Type Proyecto Programas Nacionales
Dates From 01/01/2011 to 30/06/2014

Contrato Específico de Encargo y Financiación del Proyecto de Investigación HPC4HPT: High Performance Computing for High Performance Trading

Funding entity FUNDACIÓN PEDRO BARRIÉ DE LA MAZA
Main researches Ramón Doallo Biempica, Juan Touriño Domínguez y Guillermo López Taboada
Type Contrato
Dates From 22/07/2011 to 31/03/2015

Red Gallega de Bioinformática

Funding entity Xunta de Galicia
Main researches David Posada González
Type Proyecto Programas Autonomicos
Dates From 01/01/2010 to 31/12/2011

Red Gallega de Computación de Altas Prestaciones II

Funding entity Xunta de Galicia
Main researches Ramón Doallo Biempica
Type Proyecto Programas Autonomicos
Dates From 01/01/2010 to 31/12/2011

Aplicaciones filogenéticas y funcionales de los modelos de evolución molecular y análisis genómico

Funding entity Ministerio de Ciencia e Innovación
Main researches Dr. David Posada González
Type Proyecto Programas Nacionales
Dates From 01/01/2010 to 31/12/2012

High-Performance Embedded Architectures and Compilers Network of Excellence (HiPEAC-2 NoE)

Funding entity Union Europea
Main researches Koen De Bosschere
Type Proyecto UE
Dates From 01/02/2008 to 31/01/2012

Models of Genome Evolution, Phylogenomics and the Tree of Life

Funding entity European Research Council (ERC)
Main researches Dr. David Posada González
Type Proyecto Internacional
Dates From 01/10/2008 to 30/09/2013

The Wall Lizards of the Balkan Peninsula: Tackling Questions at the Interphase of Phylogenomics and Population Genomics

Authors Nikolaos Psonis, Aglaia Antoniou, Emmanouela Kamareta, Diego Darriba, Alexandros Stamatakis, Petros Lymberakis, Nikos Poulakakis
Journal Molecular Phylogenetics and Evolution Vol. 159 Num. 107121 (pages 1 to 12)

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

Authors Diego Darriba, David Posada González, Alexey Kozlov, Alexandros Stamatakis, Benoit Morel, Tomas Flouri
Journal MOLECULAR BIOLOGY AND EVOLUTION Vol. 37 Num. 1 (pages 291 to 294)

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

Authors Pierre Barbera, Alexey Kozlov, Lucas Czech, Benoit Morel, Diego Darriba, Tomas Flouri, Alexandros Stamatakis
Journal SYSTEMATIC BIOLOGY Vol. 68 Num. 2 (pages 365 to 369)
DOI https://doi.org/10.1093/sysbio/syy054

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Authors Alexey Kozlov, Diego Darriba, Tomas Flouri, Benoit Morel, Alexandros Stamatakis
Journal BIOINFORMATICS Vol. 35 Num. 21 (pages 4453 to 4455)

Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system

Authors Nikolaos Psonis, Aglaia Antoniou, Emmanouela Kamareta, Adam Leachée, Panayiota Kotsakiozi, Diego Darriba, Alexey Kozlov, Alexandros Stamatakis, Dimitris Poursanidis, Oleg Kukushkin, Daniel Jablonski, Jelka Crnobrnja¿Isailovi¿, Iulian Gherghel, Petros Lymberakisa, Nikos Poulakakis
Journal Molecular Phylogenetics and Evolution Vol. 125 (pages 100 to 115)
DOI https://doi.org/10.1016/j.ympev.2018.03.021

The State of Software for Evolutionary Biology

Authors Diego Darriba, Tomas Flouri, Alexandros Stamatakis
Journal MOLECULAR BIOLOGY AND EVOLUTION Vol. 35 Num. 5 (pages 1037 to 1046)
DOI https://doi.org/10.1093/molbev/msy014

Prediction of Missing Sequences and Branch Lengths in Phylogenetic Data

Authors Diego Darriba, Michael Weiss, Alexandros Stamatakis
Journal BIOINFORMATICS Vol. 32 Num. 9 (pages 1331 to 1337)
DOI https://doi.org/10.1093/bioinformatics/btv768

Does the Choice of Nucleotide Substitution Models Matter Topologically?

Authors Michael Hoff, Sebastian Orf, Benedikt Riehm, Diego Darriba, Alexandros Stamatakis
Journal BMC BIOINFORMATICS Vol. 17 Num. 1 (pages 1 to 13)
DOI https://doi.org/10.1186/s12859-016-0985-x

Adapting Reproducible Research Capabilities to Resilient Distributed Calculations

Authors Manuel Rodríguez-Pascual, Christos Kanellopoulos, Antonio Juan Rubio-Montero, Diego Darriba, Ognjen Prnjat, David Posada González, Rafael Mayo-García
Journal International Journal of Grid and High Performance Computing Vol. 8 Num. 1 (pages 58 to 69)
DOI https://doi.org/10.4018/ijghpc.2016010105

The Phylogenetic Likelihood Library

Authors Tomas Flouri, Fernando Izquierdo-Carrasco, Diego Darriba, LT Nguyen, Bui Quang Minh, Arndt von Haeseler, Alexandros Stamatakis
Journal SYSTEMATIC BIOLOGY Vol. 64 Num. 2 (pages 356 to 362)
DOI https://doi.org/10.1093/sysbio/syu084

jmodeltest.org: Selection of Nucleotide Substitution Models on the Cloud.

Authors Jose Manuel Santorum , Guillermo López Taboada, Diego Darriba, David Posada
Journal BIOINFORMATICS Vol. 30 Num. 9 (pages 1310 to 1311)
DOI https://doi.org/10.1093/bioinformatics/btu032

High-Performance Computing Selection of Models of DNA Substitution for Multicore Clusters.

Authors Diego Darriba, Guillermo López Taboada, Ramón Doallo, David Posada
Journal INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS Vol. 28 Num. 1 (pages 112 to 125)

jModelTest2: More Models, New Heuristics and Parallel Computing

Authors Diego Darriba, Guillermo López Taboada, Ramón Doallo, David Posada
Journal Nature Methods Vol. 9 Num. 8 (pages 772 to 772)

ProtTest 3: fast selection of best-fit models of protein evolution

Authors Diego Darriba López, Guillermo López Taboada, Ramón Doallo, David Posada
Journal BIOINFORMATICS Vol. 27 Num. 8 (pages 1164 to 1165)

Massively Parallel Evolutionary Placement of Genetic Sequences
ISC 2017 PhD Symposium
International

Authors Pierre Barbera, Alexey Kozlov, Tomas Flouri, Diego Darriba, Lucas Czech, Alexandros Stamatakis
Place Frankfurt (Alemania)

A Fault Tolerant Workflow for Reproducible Research
Annual Global Online Conference on Information and Computer Technology (GOCICT 2014)
International

Authors Manuel Rodríguez-Pascual, Antonio Juan Rubio-Montero, Rafael Mayo-García, Christos Kanellopoulos, Ognjen Prnjat, Diego Darriba, David Posada González
Place Louisville (Estados Unidos)
DOI https://doi.org/10.1109/gocict.2014.10

Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library
12th IEEE International Workshop on High Performance Computational Biology (HiCOMB 2013)
International

Authors Diego Darriba, Andre Aberer, Tomas Flouri, Tracy Heath, Fernando Izquierdo-Carrasco, Alexandros Stamatakis
Place Boston (Estados Unidos)
DOI https://doi.org/10.1109/ipdpsw.2013.267

Positions

Academic or management positions held by teacher.

Xunta da Facultade de Informática

PDI (Membros Natos)

From 15/03/2023.

Consello do Departamento Enxeñaría de Computadores

PDI (Membros Natos)

From 15/03/2023.

Xunta da Facultade de Informática

PDI (Membros Natos)

From 22/07/2022 to 14/03/2023.

Consello do Departamento Enxeñaría de Computadores

PDI (Membros Natos)