PhD Jorge González Domínguez  

(AXU-DR)

Department Computer Engineering
Knowledgment area Computer Architecture and Technology
Research  Research group Grupo de Arquitectura de Ordenadores
Research lines No data available from Curriculum Management System at UDC. (SUXI).
Contacto UDC directory
Orcid id0000-0002-2602-4874

Teaching

Subjects taught

This section shows the teaching given in degrees, masters and other officers studies in last 6 years.

Subject and involved studies Total hours
Concurrency and Parallelism
Degree in Computer Engineering
95
Final Year Dissertation
Master in Bioinformatics for Health Sciences
20
Final Year Dissertation. Mention in Computer Engineering
Degree in Computer Engineering
4
Final Year Dissertation. Mention in Information Technology
Degree in Computer Engineering
4
Heterogeneous Programming
Master in High Performance Computing
14
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
42
New Trends and Applications in Bioinformatics and Biomedical Engineering
Master in Bioinformatics for Health Sciences
8.5
Subject and involved studies Total hours
Concurrency and Parallelism 110
Heterogeneous Programming 14
High Performance Computing in Bioinformatics 42
New Trends and Applications in Bioinformatics and Biomedical Engineering 8.5
Subject and involved studies Total hours
Concurrency and Parallelism
Degree in Computer Engineering
75
Degree Thesis Project
Computer Engineering
2
Final Year Dissertation. Mention in Computer Engineering
Degree in Computer Engineering
4
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
42
New Trends and Applications in Bioinformatics and Biomedical Engineering
Master in Bioinformatics for Health Sciences
8.5
Subject and involved studies Total hours
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
110
Concurrency and Parallelism
Degree in Computer Engineering
90
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
42
Subject and involved studies Total hours
Concurrency and Parallelism
Degree in Computer Engineering
71
Fundamentals of Computers
Degree in Computer Engineering
179
Subject and involved studies Total hours
Computer Architecture
Degree in Computer Engineering
20
Computer Architecture and Engineering
Computer Engineering
40

Defined tutoring by teacher for 2018/2019 academic course.

Faculty of Computer Science

Quarter Day Site
1st quarter Tuesday
10:30 a 12:30
D. 3.08 Área Científica
1st quarter Wednesday
10:30 a 12:30
D. 3.08 Área Científica
1st quarter Thursday
10:30 a 12:30
D. 3.08 Área Científica
2nd quarter Monday
10:30 a 11:30
D 3.08 (Área Científica)
2nd quarter Tuesday
10:30 a 12:30
D 3.08 (Área Científica)
2nd quarter Tuesday
17:30 a 18:30
D 3.08 (Área Científica)
2nd quarter Thursday
11:30 a 12:30
D 3.08 (Área Científica)
2nd quarter Thursday
15:30 a 16:30
D 3.08 (Área Científica)
2nd chance Tuesday
10:30 a 12:30
D 3.08 (Área Científica)
2nd chance Tuesday
17:30 a 18:30
D 3.08 (Área Científica)
2nd chance Wednesday
10:30 a 11:30
D 3.08 (Área Científica)
2nd chance Thursday
11:30 a 13:30
D 3.08 (Área Científica)

EOG works and final master thesis directed

Directed or codirected by current teacher since 2013 year.

Development of a tool for quality control of genetic sequences in BigData environments
Acceleration of a feature selection method for biological datasets on CPU clusters
Aceleration of a method for gene set enrichment analysis on CPU clusters
Development of a parallel tool for alignment of DNA sequences using Big Data technologies
Development of a parallel tool to accelerate the detection third-level epistasis on distributed memory systems
Extension of a parallel tool to build matrices of similarity
HMusket: k-mer spectrum corrector based on Hadoop
OpenMP 4.0 evaluation
Parallelization of third order genome association studies with OpenMP

Research results

Select merit type and year to query research merits.

Axudas para a consolidación e estruturación de unidades de investigación competitivas-REDES. Red de Tecnologías Cloud y Big Data para HPC (II)

Funding entity Consellería de Cultura, Educación e Ordenación Universitaria
Main researches JUAN TOURIÑO DOMÍNGUEZ
Type Proyecto Programas Autonomicos
Dates From 01/01/2017 to 31/12/2018

Red de Computación de Altas Prestaciones en Arquitecturas Heterogéneas (CAPAP-H6)

Funding entity Ministerio de Economía y Competitividad
Main researches Diego R. Llanos Ferraris
Type Proyecto Programas Nacionales
Dates From 01/07/2017 to 30/06/2019

Consolidación y Estructuración de Unidades de Investigación Competitivas: Grupo de Arquitectura de Computadores de la Universidad de A Coruña

Funding entity Consellería de Cultura, Educación e Ordenación Universitaria
Main researches Juan Touriño Domínguez
Type Proyecto Programas Autonomicos
Dates From 25/10/2017 to 31/12/2020

High-Performance and Embedded Architecture and Compilation, HiPEAC-4

Funding entity Union Europea
Main researches Koen De Bosschere
Type Proyecto UE
Dates From 01/01/2016 to 28/02/2018

Axudas para acreditación, estructuración e mellora de Centros de Investigación Singulares do Sistema Universitario de Galicia

Funding entity Consellería de Cultura, Educación e Ordenación Universitaria
Main researches M. G. Penedo
Type Proyecto Programas Autonomicos
Dates From 01/01/2016 to 30/11/2019

NUEVOS DESAFIOS EN COMPUTACION DE ALTAS PRESTACIONES: DESDE ARQUITECTURAS HASTA APLICACIONES (II)

Funding entity Ministerio de Economía y Competitividad (MINECO)
Main researches Ramón Doallo Biempica, Juan Touriño Domínguez
Type Proyecto Programas Nacionales
Dates From 30/12/2016 to 29/12/2019

Red de Computación de Altas Prestaciones en Arquitecturas Heterogéneas (CAPAP-H5)

Funding entity Ministerio de Economía y Competitividad
Main researches Arturo González Escribano
Type Proyecto Programas Nacionales
Dates From 01/01/2015 to 31/12/2015

Network for Sustainable Ultrascale Computing (NESUS)

Funding entity Union Europea
Main researches Jesús Carretero Pérez
Type Proyecto UE
Dates From 28/03/2014 to 27/03/2018

Nuevos Desafíos en Computación de Altas Prestaciones: desde Arquitecturas hasta Aplicaciones

Funding entity Ministerio de Economía y Competitividad
Main researches Ramón Doallo Biempica y Juan Touriño Domínguez
Type Proyecto Programas Nacionales
Dates From 01/01/2014 to 31/12/2017

Red de Tecnologías Cloud y Big Data para HPC

Funding entity Xunta de Galicia
Main researches Juan Touriño Domínguez
Type Proyecto Programas Autonomicos
Dates From 01/01/2014 to 31/12/2015

Consolidación y Estructuración de Unidades de Investigación Competitivas: Grupo de Arquitectura de Computadores de la Universidad de A Coruña (Grupo de Referencia Competitiva)

Funding entity Xunta de Galicia
Main researches Ramón Doallo Biempica
Type Proyecto Programas Autonomicos
Dates From 01/01/2013 to 31/12/2016

Ayudas para la consolidación y estructuración de unidades de investigación competitiva. Modalidad de agrupaciones estratégicas (CITIC)

Funding entity Xunta de Galicia
Main researches Ricardo Cao Abad
Type Proyecto Programas Autonomicos
Dates From 01/01/2012 to 31/12/2013

High-Performance Embedded Architectures and Compilation Network of Excellence, HiPEAC-3 NoE

Funding entity Union Europea
Main researches Koen De Bosschere
Type Proyecto UE
Dates From 01/02/2012 to 31/01/2016

Red de Computación de Altas Prestaciones sobre Arquitecturas Paralelas Heterogéneas (CAPAP-H4)

Funding entity Ministerio de Economía y Competitividad
Main researches Diego R. Llanos Ferraris
Type Proyecto Programas Nacionales
Dates From 15/06/2012 to 25/04/2014

Arquitecturas, Sistemas y Herramientas para Computación de Altas Prestaciones

Funding entity Ministerio de Economía y Competitividad
Main researches Ramón Doallo Biempica
Type Proyecto Programas Nacionales
Dates From 01/01/2011 to 30/06/2014

Open European Network for High Performance Computing on Complex Environments (ComplexHPC)

Funding entity Union Europea
Main researches Emmanuel Jeannot
Type Proyecto UE
Dates From 07/05/2009 to 06/07/2013

MPICorMat

Type Software Registrado
Entity Universidade da Coruña (UDC)
Authors Jorge González Domínguez, María J. Martín
Application date 27/06/2017
Approval date 14/08/2017

MPIGeneNet

Type Software Registrado
Entity Universidade da Coruña (UDC)
Authors Jorge González Domínguez, María J. Martín
Application date 02/11/2017
Approval date 14/02/2018

Servet Benchmark Suite

Type Software Registrado
Entity Universidade da Coruña (UDC)
Authors Jorge González Domínguez, Guillermo López Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño Domínguez
Application date 07/08/2013
Approval date 09/01/2014

parSRA: A Framework for the Parallel Execution of Short Read Aligners on Compute Clusters

Authors Jorge González Domínguez, Christian Hundt, Bertil Schmidt
Journal Journal of Computational Science Vol. 25 (pages 134 to 139)

ParBiBit: Parallel tool for binary biclustering on modern distributed-memory systems

Authors Jorge González Domínguez, Roberto Rey Expósito
Journal PLOS ONE Vol. 13 Num. 4
DOI https://doi.org/10.1371/journal.pone.0194361

MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters

Authors Jorge González Domínguez, María J. Martín
Journal IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 15 Num. 5 (pages 1732 to 1737)
DOI https://doi.org/10.1109/tcbb.2017.2761340

Accelerating Binary Biclustering on Platforms with CUDA-enabled GPU

Authors Jorge González Domínguez, Roberto Rey Expósito
Journal INFORMATION SCIENCES

MarDRe: Efficient MapReduce-based Removal of Duplicate DNA Reads in the Cloud

Authors Roberto Rey Expósito, Jorge Veiga Fachal, Jorge González Domínguez, Juan Touriño Domínguez
Journal BIOINFORMATICS Vol. 33 Num. 17 (pages 2762 to 2764)

Speed and Accuracy Improvement of Higher-Order Epistasis Detection on CUDA-enabled GPUs

Authors Daniel Jünger, Christian Hundt, Jorge González Domínguez, Bertil Schmidt
Journal Cluster Computing Vol. 20 Num. 3 (pages 1899 to 1908)
DOI https://doi.org/10.1007/s10586-017-0938-9

Parallel Definition of Tear Film Maps on Distributed-Memory Clusters for the Support of Dry Eye Diagnosis

Authors Jorge González Domínguez, Bea Remeseiro, María J. Martín
Journal COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE Vol. 139 (pages 51 to 60)
DOI https://doi.org/10.1016/j.cmpb.2016.10.027

Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures

Authors Jorge González Domínguez, Sabela Ramos Garea, Juan Touriño Domínguez, Bertil Schmidt
Journal IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS Vol. 27 Num. 8 (pages 2329 to 2340)

Multithreaded and Spark Parallelization of Feature Selection Filters

Authors Carlos Eiras Franco, Verónica Bolón Canedo, Sabela Ramos Garea, Jorge González Domínguez, María Amparo Alonso Betanzos, Juan Touriño Domínguez
Journal Journal of Computational Science Vol. 17 (pages 609 to 619)

MSAProbs-MPI: Parallel Multiple Sequence Aligner for Distributed-Memory Systems

Authors Jorge González Domínguez, Yongchao Liu, Bertil Schmidt, Juan Touriño Domínguez
Journal BIOINFORMATICS Vol. 32 Num. 24 (pages 3826 to 3828)

Parallel and Scalable Short-read Alignment on Multi-core Clusters using UPC++

Authors Jorge González Domínguez, Bertil Schmidt, Yongchao Liu
Journal PLOS ONE Vol. 11 Num. 1 (pages 1 to 15)
DOI https://doi.org/10.1371/journal.pone.0145490

Large-Scale Genome-Wide Association Studies on a GPU Cluster Using a CUDA-Accelerated PGAS Programming Model

Authors Jorge González Domínguez, Jan C. Kässens, Lars Wienbrandt, Bertil Schmidt
Journal INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS Vol. 29 Num. 4 (pages 506 to 510)
DOI https://doi.org/10.1177/1094342015585846

Parallelizing Epistasis Detection in GWAS on FPGA and GPU-accelerated Computing Systems

Authors Jorge González Domínguez, Lars Wienbrandt, Jan C. Kässens, David Ellinghaus, Manfred Schimmler, Bertil Schmidt
Journal IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 12 Num. 5 (pages 982 to 994)
DOI https://doi.org/10.1109/tcbb.2015.2389958

High-Speed Exhaustive 3-locus Interaction Epistasis Analysis on FPGAs

Authors Jan C. Kässens, Lars Wienbrandt, Jorge González Domínguez, Bertil Schmidt, Manfred Schimmler
Journal Journal of Computational Science Vol. 9 (pages 131 to 136)
DOI https://doi.org/10.1016/j.jocs.2015.04.030

GPU-Accelerated Exhaustive Search for Third-Order Epistatic Interactions in Case-Control Studies

Authors Jorge González Domínguez, Bertil Schmidt
Journal Journal of Computational Science Vol. 8 (pages 93 to 100)
DOI https://doi.org/10.1016/j.jocs.2015.04.001

A 2D algorithm with asymmetric workload for the UPC conjugate gradient method

Authors Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño Domínguez
Journal JOURNAL OF SUPERCOMPUTING Vol. 70 Num. 2 (pages 816 to 829)
DOI https://doi.org/10.1007/s11227-014-1300-0

Scalable PGAS Collective Operations in NUMA Clusters

Authors Damián Álvarez Mallón, Guillermo López Taboada, Carlos Teijeiro Barjas, Jorge González Domínguez, Andrés Gómez Tato, Brian Wibecan
Journal Cluster Computing Vol. 17 Num. 4 (pages 1473 to 1495)

Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform

Authors Roberto Rey Expósito, Guillermo López Taboada, Sabela Ramos Garea, Jorge González Domínguez, Juan Touriño Domínguez, Ramón Doallo
Journal Journal of Grid Computing Vol. 11 Num. 4 (pages 613 to 631)
DOI https://doi.org/10.1007/s10723-013-9250-y

The Servet 3.0 benchmark suite: Characterization of network performance degradation

Authors Jorge González-Domínguez, María J. Martín, Guillermo López Taboada, Roberto Rey Expósito, Juan Touriño Domínguez
Journal COMPUTERS & ELECTRICAL ENGINEERING Vol. 39 Num. 8 (pages 2483 to 2493)
DOI https://doi.org/10.1016/j.compeleceng.2013.08.012

Performance evaluation of sparse matrix products in UPC

Authors Jorge González-Domínguez, Óscar García-López, Guillermo López Taboada, María J. Martín, Juan Touriño Domínguez
Journal JOURNAL OF SUPERCOMPUTING Vol. 64 Num. 1 (pages 100 to 109)
DOI https://doi.org/10.1007/s11227-012-0796-4

A Parallel Numerical Library for UPC

Authors Jorge González Domínguez, María J. Martín, Guillermo López Taboada, Juan Touriño Domínguez, Ramón Doallo, Andrés Gómez Tato
Journal LECTURE NOTES IN COMPUTER SCIENCE Vol. 5704 (pages 630 to 641)

Parallel Programming: Concepts and Practice

Authors Bertil Schmidt, Jorge González Domínguez, Christian Hundt, Moritz Schlarb
Publishing Morgan Kaufmann, ()
ISBN 9780128498903

Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors
15th International Conference on High Performance Computing and Simulation (HPCS 2017)
International

Authors Christian Ponte, Jorge González Domínguez, María J. Martín
Place Genoa (Italia)
DOI https://doi.org/10.1109/hpcs.2017.65

Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters.
17th International Conference on Computational Science (ICCS 2017)
International

Authors Jorge González Domínguez, María J. Martín
Place Zurich (Suiza)
DOI https://doi.org/10.1016/j.procs.2017.05.023

Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs
4th International Workshop on Parallelism in Bioinformatics (PBio 2016, in conjunction with Euro-Par 2016)
International

Authors Daniel Jünger, Christian Hundt, Jorge González Domínguez, Bertil Schmidt
Place Grenoble (Francia)
DOI https://doi.org/10.1007/978-3-319-58943-5_34

Combining GPU and FPGA Technology for Efficient Exhaustive Interaction Analysis in GWAS
27th IEEE International Conference on Application-specific Systems, Architectures and Processors (ASAP 2016)
International

Authors Jan C. Kässens, Lars Wienbrandt, Manfred Schimmler, Jorge González Domínguez, Bertil Schmidt
Place London (Reino Unido)
DOI https://doi.org/10.1109/asap.2016.7760788

Acceleration of Tear Film Map Definition on Multicore Systems
16th International Conference on Computational Science (ICCS 2016)
International

Authors Jorge González Domínguez, Beatriz Remeseiro López, María J. Martín
Place San Diego, CA (Estados Unidos)
DOI https://doi.org/10.1016/j.procs.2016.05.296

Using a CUDA-Accelerated PGAS Model on a GPU Cluster for Bioinformatics
GPU Technology Conference (GTC 2015)
International

Authors Jorge González Domínguez, Bertil Schmidt
Place San Jose, CA (Estados Unidos)

Faster Compressed Sparse Row (CSR)-based Sparse Matrix-Vector Multiplication using CUDA
GPU Technology Conference (GTC 2015)
International

Authors Yongchao Liu, Jorge González Domínguez, Bertil Schmidt
Place San Jose, CA (Estados Unidos)

The Parallel Conjugate Gradient Method using Unified Parallel C
International Conference on Computational and Mathematical Methods in Science and Engineering, CMMSE 2014
International

Authors Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño Domínguez
Organization Univ. de Cádiz
Place Rota (España)

The Impact of Workload Strategies on a UPC-based CG
16th SIAM Conference on Parallel Processing for Scientific Computing
International

Authors Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño Domínguez
Organization SIAM
Place Portland, Oregon (Estados Unidos)

UPC++ for Bioinformatics: A Case Study Using Genome-Wide Association Studies.
15th IEEE International Conference on Cluster Computing (Cluster 2014)
International

Authors Jan C. Kässens, Jorge González Domínguez, Lars Wienbrandt, Bertil Schmidt
Place Madrid (España)
DOI https://doi.org/10.1109/cluster.2014.6968770

Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors
12th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA 2014)
International

Authors Sandra Catalán, Jorge González Domínguez, Rafael Mayo Gual, Enrique S. Quintana-Ortí
Place Milan (Italia)
DOI https://doi.org/10.1109/ispa.2014.11

Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS
20th International Conference Euro-Par 2014 Parallel Processing
International

Authors Jorge González Domínguez, Bertil Schmidt, Jan C. Kässens, Lars Wienbrandt
Place Porto (Portugal)
DOI https://doi.org/10.1007/978-3-319-09873-9_57

FPGA-Based Acceleration of Detecting Statistical Epistasis in GWAS
14th International Conference on Computational Science (ICCS 2014)
International

Authors Lars Wienbrandt, Jan C. Kässens, Jorge González Domínguez, Bertil Schmidt, David Ellinghaus, Manfred Schimmler
Place Cairns (Australia)
DOI https://doi.org/10.1016/j.procs.2014.05.020

Servet: A Benchmark Suite for Autotuning on Multicore Clusters
24th IEEE International Parallel and Distributed Processing Symposium (IPDPS¿2010)
International

Authors Jorge González Domínguez, Guillermo López Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño Domínguez
Place Atlanta (Estados Unidos)

Servet: una suite de benchmarks para el soporte del autotuning en clusters de sistemas multinúcleo
XXI Jornadas de Paralelismo
National

Authors Jorge González Domínguez, Guillermo López Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño Domínguez
Place Valencia (España)

Una Biblioteca Numérica Paralela para UPC
XX Jornadas de Paralelismo
National

Authors Jorge González Domínguez, María J. Martín, Guillermo López Taboada, Juan Touriño Domínguez, Ramón Doallo, Andrés Gómez Tato
Place Coruña, A (España)