PhD Diego Darriba López  

Profesor axudante doutor (AXU-DR)

Department Computer Engineering
Knowledgment area Computer Architecture and Technology
Research  Research group Grupo de Arquitectura de Ordenadores
Research lines Bioinformatics Phylogenetics High Performance Computing
Contacto UDC directory
Orcid id0000-0001-5482-3932 ResearcherIDN-7273-2019 Scopus37088309000

Teaching

Subjects taught

This section shows the teaching given in degrees, masters and other officers studies in last 6 years.

Subject and involved studies Distance hours Total hours
Advanced Parallel Programming 6 16
Computer Structure 0 60
Concurrency and Parallelism 0 80
Fundamentals of Computers 0 45
Subject and involved studies Distance hours Total hours
Advanced Parallel Programming
Master in High Performance Computing
0 10
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
0 83
Concurrency and Parallelism
Degree in Computer Engineering
0 75
Fundamentals of Computers
Degree in Data Science and Engineering
0 45
Subject and involved studies Distance hours Total hours
Advanced Parallel Programming
Master in High Performance Computing
0 10
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
0 75
Concurrency and Parallelism
Degree in Computer Engineering
0 80
Fundamentals of Computers
Degree in Computer Engineering
0 50
Subject and involved studies Distance hours Total hours
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
0 120
Concurrency and Parallelism
Degree in Computer Engineering
0 94
Fundamentals of Computers
Degree in Computer Engineering
0 25
Subject and involved studies Distance hours Total hours
Computer Science Preliminaries
Degree in Computer Engineering
0 59.5
Subject and involved studies Distance hours Total hours
Fundamentals of Computers
Degree in Computer Engineering
0 60

Defined tutoring by teacher for 2020/2021 academic course.

Faculty of Computer Science

Quarter Day Site
1st quarter Tuesday
11:00 a 13:00
D3.10 Área Científica
1st quarter Thursday
11:00 a 13:00
D3.10 Área Científica
1st quarter Friday
11:00 a 13:00
D3.10 Área Científica
2nd quarter Monday
10:00 a 12:00
D3.10 Área Científica
2nd quarter Thursday
10:00 a 12:00
D3.10 Área Científica
2nd quarter Thursday
18:00 a 20:00
D3.10 Área Científica
2nd chance Monday
18:00 a 20:00
D3.10 Área Científica
2nd chance Wednesday
12:00 a 14:00
D3.10 Área Científica

EOG works and final master thesis directed

No available EOG works or final master thesis directed by current teacher since 2013 year.

Research results

Select merit type and year to query research merits.

Desafíos Actuales en HPC: Arquitecturas, Software y Aplicaciones

Funding entity Ministerio de Ciencia e Innovación
Main researches Touriño Dominguez, Juan e Doallo Biempica, Ramón
Type Proyecto Programas Nacionales
Dates From 01/06/2020 to 31/05/2023

NUEVOS DESAFIOS EN COMPUTACION DE ALTAS PRESTACIONES: DESDE ARQUITECTURAS HASTA APLICACIONES (II)

Funding entity Ministerio de Economía y Competitividad (MINECO)
Main researches Ramón Doallo Biempica, Juan Touriño Domínguez
Type Proyecto Programas Nacionales
Dates From 30/12/2016 to 29/12/2019

High-Performance Embedded Architectures and Compilation Network of Excellence, HiPEAC-3 NoE

Funding entity Union Europea
Main researches Koen De Bosschere
Type Proyecto UE
Dates From 01/02/2012 to 31/01/2016

Arquitecturas, Sistemas y Herramientas para Computación de Altas Prestaciones

Funding entity Ministerio de Economía y Competitividad
Main researches Ramón Doallo Biempica
Type Proyecto Programas Nacionales
Dates From 01/01/2011 to 30/06/2014

Contrato Específico de Encargo y Financiación del Proyecto de Investigación HPC4HPT: High Performance Computing for High Performance Trading

Funding entity FUNDACIÓN PEDRO BARRIÉ DE LA MAZA
Main researches Ramón Doallo Biempica, Juan Touriño Domínguez y Guillermo López Taboada
Type Contrato
Dates From 22/07/2011 to 31/03/2015

Red Gallega de Bioinformática

Funding entity Xunta de Galicia
Main researches David Posada González
Type Proyecto Programas Autonomicos
Dates From 01/01/2010 to 31/12/2011

Red Gallega de Computación de Altas Prestaciones II

Funding entity Xunta de Galicia
Main researches Ramón Doallo Biempica
Type Proyecto Programas Autonomicos
Dates From 01/01/2010 to 31/12/2011

Aplicaciones filogenéticas y funcionales de los modelos de evolución molecular y análisis genómico

Funding entity Ministerio de Ciencia e Innovación
Main researches Dr. David Posada González
Type Proyecto Programas Nacionales
Dates From 01/01/2010 to 31/12/2012

High-Performance Embedded Architectures and Compilers Network of Excellence (HiPEAC-2 NoE)

Funding entity Union Europea
Main researches Koen De Bosschere
Type Proyecto UE
Dates From 01/02/2008 to 31/01/2012

Models of Genome Evolution, Phylogenomics and the Tree of Life

Funding entity European Research Council (ERC)
Main researches Dr. David Posada González
Type Proyecto Internacional
Dates From 01/10/2008 to 30/09/2013

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

Authors Diego Darriba, David Posada González, Alexey Kozlov, Alexandros Stamatakis, Benoit Morel, Tomas Flouri
Journal MOLECULAR BIOLOGY AND EVOLUTION Vol. 37 Num. 1 (pages 291 to 294)

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

Authors Pierre Barbera, Alexey Kozlov, Lucas Czech, Benoit Morel, Diego Darriba, Tomas Flouri, Alexandros Stamatakis
Journal SYSTEMATIC BIOLOGY Vol. 68 Num. 2 (pages 365 to 369)
DOI https://doi.org/10.1093/sysbio/syy054

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Authors Alexey Kozlov, Diego Darriba, Tomas Flouri, Benoit Morel, Alexandros Stamatakis
Journal BIOINFORMATICS Vol. 35 Num. 21 (pages 4453 to 4455)

Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system

Authors Nikolaos Psonis, Aglaia Antoniou, Emmanouela Kamareta, Adam Leachée, Panayiota Kotsakiozi, Diego Darriba, Alexey Kozlov, Alexandros Stamatakis, Dimitris Poursanidis, Oleg Kukushkin, Daniel Jablonski, Jelka Crnobrnja¿Isailovi¿, Iulian Gherghel, Petros Lymberakisa, Nikos Poulakakis
Journal MOLECULAR PHYLOGENETICS AND EVOLUTION Vol. 125 (pages 100 to 115)
DOI https://doi.org/10.1016/j.ympev.2018.03.021

The State of Software for Evolutionary Biology

Authors Diego Darriba, Tomas Flouri, Alexandros Stamatakis
Journal MOLECULAR BIOLOGY AND EVOLUTION Vol. 35 Num. 5 (pages 1037 to 1046)
DOI https://doi.org/10.1093/molbev/msy014

Prediction of Missing Sequences and Branch Lengths in Phylogenetic Data

Authors Diego Darriba, Michael Weiss, Alexandros Stamatakis
Journal BIOINFORMATICS Vol. 32 Num. 9 (pages 1331 to 1337)
DOI https://doi.org/10.1093/bioinformatics/btv768

Does the Choice of Nucleotide Substitution Models Matter Topologically?

Authors Michael Hoff, Sebastian Orf, Benedikt Riehm, Diego Darriba, Alexandros Stamatakis
Journal BMC BIOINFORMATICS Vol. 17 Num. 1 (pages 1 to 13)
DOI https://doi.org/10.1186/s12859-016-0985-x

Adapting Reproducible Research Capabilities to Resilient Distributed Calculations

Authors Manuel Rodríguez-Pascual, Christos Kanellopoulos, Antonio Juan Rubio-Montero, Diego Darriba, Ognjen Prnjat, David Posada González, Rafael Mayo-García
Journal International Journal of Grid and High Performance Computing Vol. 8 Num. 1 (pages 58 to 69)
DOI https://doi.org/10.4018/ijghpc.2016010105

The Phylogenetic Likelihood Library

Authors Tomas Flouri, Fernando Izquierdo-Carrasco, Diego Darriba, LT Nguyen, Bui Quang Minh, Arndt von Haeseler, Alexandros Stamatakis
Journal SYSTEMATIC BIOLOGY Vol. 64 Num. 2 (pages 356 to 362)
DOI https://doi.org/10.1093/sysbio/syu084

jmodeltest.org: Selection of Nucleotide Substitution Models on the Cloud.

Authors Jose Manuel Santorum , Guillermo López Taboada, Diego Darriba, David Posada
Journal BIOINFORMATICS Vol. 30 Num. 9 (pages 1310 to 1311)
DOI https://doi.org/10.1093/bioinformatics/btu032

High-Performance Computing Selection of Models of DNA Substitution for Multicore Clusters.

Authors Diego Darriba, Guillermo López Taboada, Ramón Doallo, David Posada
Journal INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS Vol. 28 Num. 1 (pages 112 to 125)

jModelTest2: More Models, New Heuristics and Parallel Computing

Authors Diego Darriba, Guillermo López Taboada, Ramón Doallo, David Posada
Journal Nature Methods Vol. 9 Num. 8 (pages 772 to 772)

ProtTest 3: fast selection of best-fit models of protein evolution

Authors Diego Darriba López, Guillermo López Taboada, Ramón Doallo, David Posada
Journal BIOINFORMATICS Vol. 27 Num. 8 (pages 1164 to 1165)

Massively Parallel Evolutionary Placement of Genetic Sequences
ISC 2017 PhD Symposium
International

Authors Pierre Barbera, Alexey Kozlov, Tomas Flouri, Diego Darriba, Lucas Czech, Alexandros Stamatakis
Place Frankfurt (Alemania)

A Fault Tolerant Workflow for Reproducible Research
Annual Global Online Conference on Information and Computer Technology (GOCICT 2014)
International

Authors Manuel Rodríguez-Pascual, Antonio Juan Rubio-Montero, Rafael Mayo-García, Christos Kanellopoulos, Ognjen Prnjat, Diego Darriba, David Posada González
Place Louisville (Estados Unidos)
DOI https://doi.org/10.1109/gocict.2014.10

Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library
12th IEEE International Workshop on High Performance Computational Biology (HiCOMB 2013)
International

Authors Diego Darriba, Andre Aberer, Tomas Flouri, Tracy Heath, Fernando Izquierdo-Carrasco, Alexandros Stamatakis
Place Boston (Estados Unidos)
DOI https://doi.org/10.1109/ipdpsw.2013.267

Positions

Academic or management positions held by teacher.

Consello do Departamento Enxeñaría de Computadores

PDI (Membros Natos)