| Department | Computer Engineering |
| Knowledgment area | Computer Architecture and Technology |
| Research | Research group Grupo de Arquitectura de Ordenadores |
| Research lines | Bioinformatics Phylogenetics High Performance Computing |
| Contacto | UDC directory |
| Orcid id0000-0001-5482-3932 ResearcherIDN-7273-2019 Scopus37088309000 | |
This section shows the teaching given in degrees, masters and other officers studies in last 6 years.
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
| Advanced Parallel Programming | Optional | 0 | 10 |
| Computer Structure | Compulsory | 0 | 105 |
| Concurrency and Parallelism | Compulsory | 0 | 55 |
| Data Management Technology | Optional | 0 | 26 |
| Master's Dissertation | Compulsory | 0 | 3.5 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Programming
Master in High Performance Computing
|
Optional | 0 | 10 |
|
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
|
Compulsory | 0 | 135 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 90 |
|
Final Year Dissertation. Mention in Information Technology
Degree in Computer Engineering
|
Compulsory | 0 | 5 |
|
Final Year Dissertation. Mention in Software Engineering
Degree in Computer Engineering
|
Compulsory | 0 | 2.5 |
|
Fundamentals of Computers
Degree in Computer Engineering
|
Core | 0 | 24 |
|
Master's Dissertation
Master in High Performance Computing
|
Compulsory | 0 | 1 |
|
Work Placement
Master in Bioinformatics for Health Sciences
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 1 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Programming
Master in High Performance Computing
|
Optional | 0 | 10 |
|
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
|
Compulsory | 0 | 180 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 60 |
|
Final Year Dissertation. Mention in Computer Engineering
Degree in Computer Engineering
|
Compulsory | 0 | 8 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Programming
Master in High Performance Computing
|
Optional | 6 | 16 |
|
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
Master's in Computer Engineering
|
Compulsory | 0 | 129 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 85 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Programming
Master in High Performance Computing
|
Optional | 6 | 16 |
|
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
|
Compulsory | 0 | 61 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 75 |
|
Fundamentals of Computers
Degree in Data Science and Engineering
|
Core | 0 | 45 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Programming
Master in High Performance Computing
|
Optional | 0 | 10 |
|
Computer Structure
Degree in Computer Engineering
Master's in Computer Engineering
|
Compulsory | 0 | 83 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 75 |
|
Fundamentals of Computers
Degree in Data Science and Engineering
|
Core | 0 | 45 |
Defined tutoring by teacher for 2024/2025 academic course.
| Quarter | Day | Site |
|---|---|---|
| 1st quarter |
Monday
11:30 a 13:30 |
D3.10 Área Científica |
| 1st quarter |
Tuesday
17:00 a 19:00 |
D3.10 Área Científica |
| 1st quarter |
Thursday
17:30 a 19:30 |
D3.10 Área Científica |
| 2nd quarter |
Monday
11:30 a 13:30 |
D3.10 Área Científica |
| 2nd quarter |
Wednesday
10:30 a 12:30 |
D3.10 Área Científica |
| 2nd quarter |
Friday
17:30 a 19:30 |
D3.10 Área Científica |
Directed or codirected by current teacher since 2013 year.
Select merit type and year to query research merits.
Arquitecturas, Frameworks y Aplicaciones de la Computación de Altas Prestaciones
| Funding entity | Ministerio de Ciencia e Innovación |
| Main researches | TOURIÑO DOMÍNGUEZ JUAN (IP1) / RODRIGUEZ ÁLVAREZ GABRIEL (IP2) |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/09/2023 to 31/08/2026 |
AXUDAS PARA A CONSOLIDACIÓN E ESTRUTURACIÓN DE UNIDADES DE INVESTIGACIÓN COMPETITIVAS.GRC 2021
| Funding entity | Consellería de Cultura, Educación e Ordenación Universitaria |
| Main researches | Juan Touriño Domínguez |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2021 to 20/11/2024 |
Desafíos Actuales en HPC: Arquitecturas, Software y Aplicaciones
| Funding entity | Ministerio de Ciencia e Innovación |
| Main researches | Touriño Dominguez, Juan e Doallo Biempica, Ramón |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/06/2020 to 31/05/2023 |
NUEVOS DESAFIOS EN COMPUTACION DE ALTAS PRESTACIONES: DESDE ARQUITECTURAS HASTA APLICACIONES (II)
| Funding entity | Ministerio de Economía y Competitividad (MINECO) |
| Main researches | Ramón Doallo Biempica, Juan Touriño Domínguez |
| Type | Proyecto Programas Nacionales |
| Dates | From 30/12/2016 to 29/12/2019 |
High-Performance Embedded Architectures and Compilation Network of Excellence, HiPEAC-3 NoE
| Funding entity | Union Europea |
| Main researches | Koen De Bosschere |
| Type | Proyecto UE |
| Dates | From 01/02/2012 to 31/01/2016 |
Arquitecturas, Sistemas y Herramientas para Computación de Altas Prestaciones
| Funding entity | Ministerio de Economía y Competitividad |
| Main researches | Ramón Doallo Biempica |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/01/2011 to 30/06/2014 |
Contrato Específico de Encargo y Financiación del Proyecto de Investigación HPC4HPT: High Performance Computing for High Performance Trading
| Funding entity | FUNDACIÓN PEDRO BARRIÉ DE LA MAZA |
| Main researches | Ramón Doallo Biempica, Juan Touriño Domínguez y Guillermo López Taboada |
| Type | Contrato |
| Dates | From 22/07/2011 to 31/03/2015 |
Red Gallega de Bioinformática
| Funding entity | Xunta de Galicia |
| Main researches | David Posada González |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2010 to 31/12/2011 |
Red Gallega de Computación de Altas Prestaciones II
| Funding entity | Xunta de Galicia |
| Main researches | Ramón Doallo Biempica |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2010 to 31/12/2011 |
Aplicaciones filogenéticas y funcionales de los modelos de evolución molecular y análisis genómico
| Funding entity | Ministerio de Ciencia e Innovación |
| Main researches | Dr. David Posada González |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/01/2010 to 31/12/2012 |
High-Performance Embedded Architectures and Compilers Network of Excellence (HiPEAC-2 NoE)
| Funding entity | Union Europea |
| Main researches | Koen De Bosschere |
| Type | Proyecto UE |
| Dates | From 01/02/2008 to 31/01/2012 |
Models of Genome Evolution, Phylogenomics and the Tree of Life
| Funding entity | European Research Council (ERC) |
| Main researches | Dr. David Posada González |
| Type | Proyecto Internacional |
| Dates | From 01/10/2008 to 30/09/2013 |
The Wall Lizards of the Balkan Peninsula: Tackling Questions at the Interphase of Phylogenomics and Population Genomics
| Authors | Nikolaos Psonis, Aglaia Antoniou, Emmanouela Kamareta, Diego Darriba, Alexandros Stamatakis, Petros Lymberakis, Nikos Poulakakis |
| Journal | Molecular Phylogenetics and Evolution Vol. 159 Num. 107121 (pages 1 to 12) |
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
| Authors | Diego Darriba, David Posada González, Alexey Kozlov, Alexandros Stamatakis, Benoit Morel, Tomas Flouri |
| Journal | MOLECULAR BIOLOGY AND EVOLUTION Vol. 37 Num. 1 (pages 291 to 294) |
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
| Authors | Pierre Barbera, Alexey Kozlov, Lucas Czech, Benoit Morel, Diego Darriba, Tomas Flouri, Alexandros Stamatakis |
| Journal | SYSTEMATIC BIOLOGY Vol. 68 Num. 2 (pages 365 to 369) |
| DOI | https://doi.org/10.1093/sysbio/syy054 |
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
| Authors | Alexey Kozlov, Diego Darriba, Tomas Flouri, Benoit Morel, Alexandros Stamatakis |
| Journal | BIOINFORMATICS Vol. 35 Num. 21 (pages 4453 to 4455) |
Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system
| Authors | Nikolaos Psonis, Aglaia Antoniou, Emmanouela Kamareta, Adam Leachée, Panayiota Kotsakiozi, Diego Darriba, Alexey Kozlov, Alexandros Stamatakis, Dimitris Poursanidis, Oleg Kukushkin, Daniel Jablonski, Jelka Crnobrnja¿Isailovi¿, Iulian Gherghel, Petros Lymberakisa, Nikos Poulakakis |
| Journal | Molecular Phylogenetics and Evolution Vol. 125 (pages 100 to 115) |
| DOI | https://doi.org/10.1016/j.ympev.2018.03.021 |
The State of Software for Evolutionary Biology
| Authors | Diego Darriba, Tomas Flouri, Alexandros Stamatakis |
| Journal | MOLECULAR BIOLOGY AND EVOLUTION Vol. 35 Num. 5 (pages 1037 to 1046) |
| DOI | https://doi.org/10.1093/molbev/msy014 |
Prediction of Missing Sequences and Branch Lengths in Phylogenetic Data
| Authors | Diego Darriba, Michael Weiss, Alexandros Stamatakis |
| Journal | BIOINFORMATICS Vol. 32 Num. 9 (pages 1331 to 1337) |
| DOI | https://doi.org/10.1093/bioinformatics/btv768 |
Does the Choice of Nucleotide Substitution Models Matter Topologically?
| Authors | Michael Hoff, Sebastian Orf, Benedikt Riehm, Diego Darriba, Alexandros Stamatakis |
| Journal | BMC BIOINFORMATICS Vol. 17 Num. 1 (pages 1 to 13) |
| DOI | https://doi.org/10.1186/s12859-016-0985-x |
Adapting Reproducible Research Capabilities to Resilient Distributed Calculations
| Authors | Manuel Rodríguez-Pascual, Christos Kanellopoulos, Antonio Juan Rubio-Montero, Diego Darriba, Ognjen Prnjat, David Posada González, Rafael Mayo-García |
| Journal | International Journal of Grid and High Performance Computing Vol. 8 Num. 1 (pages 58 to 69) |
| DOI | https://doi.org/10.4018/ijghpc.2016010105 |
The Phylogenetic Likelihood Library
| Authors | Tomas Flouri, Fernando Izquierdo-Carrasco, Diego Darriba, LT Nguyen, Bui Quang Minh, Arndt von Haeseler, Alexandros Stamatakis |
| Journal | SYSTEMATIC BIOLOGY Vol. 64 Num. 2 (pages 356 to 362) |
| DOI | https://doi.org/10.1093/sysbio/syu084 |
jmodeltest.org: Selection of Nucleotide Substitution Models on the Cloud.
| Authors | Jose Manuel Santorum , Guillermo López Taboada, Diego Darriba, David Posada |
| Journal | BIOINFORMATICS Vol. 30 Num. 9 (pages 1310 to 1311) |
| DOI | https://doi.org/10.1093/bioinformatics/btu032 |
High-Performance Computing Selection of Models of DNA Substitution for Multicore Clusters.
| Authors | Diego Darriba, Guillermo López Taboada, Ramón Doallo, David Posada |
| Journal | INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS Vol. 28 Num. 1 (pages 112 to 125) |
jModelTest2: More Models, New Heuristics and Parallel Computing
| Authors | Diego Darriba, Guillermo López Taboada, Ramón Doallo, David Posada |
| Journal | Nature Methods Vol. 9 Num. 8 (pages 772 to 772) |
ProtTest 3: fast selection of best-fit models of protein evolution
| Authors | Diego Darriba López, Guillermo López Taboada, Ramón Doallo, David Posada |
| Journal | BIOINFORMATICS Vol. 27 Num. 8 (pages 1164 to 1165) |
Massively Parallel Evolutionary Placement of Genetic Sequences
ISC 2017 PhD Symposium
International
| Authors | Pierre Barbera, Alexey Kozlov, Tomas Flouri, Diego Darriba, Lucas Czech, Alexandros Stamatakis |
| Place | Frankfurt (Alemania) |
A Fault Tolerant Workflow for Reproducible Research
Annual Global Online Conference on Information and Computer Technology (GOCICT 2014)
International
| Authors | Manuel Rodríguez-Pascual, Antonio Juan Rubio-Montero, Rafael Mayo-García, Christos Kanellopoulos, Ognjen Prnjat, Diego Darriba, David Posada González |
| Place | Louisville (Estados Unidos) |
| DOI | https://doi.org/10.1109/gocict.2014.10 |
Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library
12th IEEE International Workshop on High Performance Computational Biology (HiCOMB 2013)
International
| Authors | Diego Darriba, Andre Aberer, Tomas Flouri, Tracy Heath, Fernando Izquierdo-Carrasco, Alexandros Stamatakis |
| Place | Boston (Estados Unidos) |
| DOI | https://doi.org/10.1109/ipdpsw.2013.267 |
Academic or management positions held by teacher.