| Department | Computer Engineering |
| Knowledgment area | Computer Architecture and Technology |
| Research | Research group Grupo de Arquitectura de Ordenadores |
| Research lines | No data available from Curriculum Management System at UDC. (SUXI). |
| Teaching merits evaluation | 2 five years period(s) |
| Research merits evaluation | 2 six years period(s) |
| Contacto | UDC directory |
| Orcid id0000-0002-2602-4874 ResearcherIDH-7371-2016 Scopus35113258100 | |
This section shows the teaching given in degrees, masters and other officers studies in last 6 years.
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Processing
Degree in Data Science and Engineering
|
Optional | 0 | 14 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 20 |
|
Final Year Dissertation. Mention in Computer Science
Degree in Computer Engineering
|
Compulsory | 0 | 2 |
|
Final Year Dissertation. Mention in Information Systems
Degree in Computer Engineering
|
Compulsory | 0 | 0.5 |
|
Final Year Dissertation. Mention in Software Engineering
Degree in Computer Engineering
|
Compulsory | 0 | 1.5 |
|
Heterogeneous Programming
Master in High Performance Computing
|
Compulsory | 8 | 24 |
|
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
|
Compulsory | 0 | 42 |
|
Master's Dissertation
Master in High Performance Computing
|
Compulsory | 0 | 25 |
|
Master's Dissertation
Master in Bioinformatics for Health Sciences
|
Compulsory | 0 | 11.5 |
|
New Trends and Applications in Bioinformatics and Biomedical Engineering
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 8.5 |
|
Work Placement
Master in High Performance Computing
|
Compulsory | 0 | 5 |
|
Work Placement
Master in Bioinformatics for Health Sciences
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 0.5 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
| Advanced Parallel Processing | Optional | 0 | 14 |
| Concurrency and Parallelism | Compulsory | 0 | 46 |
| Final Year Dissertation. Mention in Computer Science | Compulsory | 0 | 6.5 |
| Heterogeneous Programming | Compulsory | 8 | 24 |
| High Performance Computing in Bioinformatics | Compulsory | 0 | 42 |
| Master's Dissertation | Compulsory | 0 | 44.33 |
| Master's Dissertation | Compulsory | 0 | 12.66 |
| New Trends and Applications in Bioinformatics and Biomedical Engineering | Optional | 0 | 8.5 |
| Work Placement | Compulsory | 0 | 2 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Processing
Degree in Data Science and Engineering
|
Optional | 0 | 14 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 40 |
|
Final Year Dissertation. Mention in Computer Science
Degree in Computer Engineering
|
Compulsory | 0 | 4 |
|
Heterogeneous Programming
Master in High Performance Computing
|
Compulsory | 8 | 24 |
|
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
|
Compulsory | 0 | 41 |
|
Master's Dissertation
Master in High Performance Computing
|
Compulsory | 0 | 56.5 |
|
New Trends and Applications in Bioinformatics and Biomedical Engineering
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 8.5 |
|
Work Placement
Master in High Performance Computing
|
Compulsory | 0 | 2 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Advanced Parallel Processing
Degree in Data Science and Engineering
|
Optional | 0 | 14 |
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 80 |
|
Final Year Dissertation. Mention in Computer Engineering
Degree in Computer Engineering
|
Compulsory | 0 | 4 |
|
Final Year Dissertation. Mention in Computer Science
Degree in Computer Engineering
|
Compulsory | 0 | 4 |
|
Final Year Dissertation. Mention in Information Technology
Degree in Computer Engineering
|
Compulsory | 0 | 4 |
|
Heterogeneous Programming
Master in High Performance Computing
|
Compulsory | 8 | 22 |
|
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
|
Compulsory | 0 | 41 |
|
Master's Dissertation
Master in High Performance Computing
|
Compulsory | 0 | 15 |
|
New Trends and Applications in Bioinformatics and Biomedical Engineering
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 8.5 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Concurrency and Parallelism
Degree in Computer Engineering
|
Compulsory | 0 | 50 |
|
Final Year Dissertation. Mention in Computer Science
Degree in Computer Engineering
|
Compulsory | 0 | 4 |
|
Heterogeneous Programming
Master in High Performance Computing
|
Compulsory | 16 | 30 |
|
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
|
Compulsory | 0 | 42 |
|
Master's Dissertation
Master in High Performance Computing
|
Compulsory | 0 | 20 |
|
New Trends and Applications in Bioinformatics and Biomedical Engineering
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 8.5 |
|
Work Placement
Master in Bioinformatics for Health Sciences
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 0.5 |
| Subject and involved studies | Type | Distance hours | Total hours |
|---|---|---|---|
|
Final Year Dissertation. Mention in Software Engineering
Degree in Computer Engineering
|
Compulsory | 0 | 4 |
|
Heterogeneous Programming
Master in High Performance Computing
|
Compulsory | 16 | 30 |
|
High Performance Computing in Bioinformatics
Master in Bioinformatics for Health Sciences
|
Compulsory | 0 | 42 |
|
Master's Dissertation
Master in High Performance Computing
|
Compulsory | 0 | 5 |
|
New Trends and Applications in Bioinformatics and Biomedical Engineering
Master in Bioinformatics for Health Sciences
|
Optional | 0 | 8.5 |
Defined tutoring by teacher for 2024/2025 academic course.
| Quarter | Day | Site |
|---|---|---|
| 1st quarter |
Tuesday
10:30 a 12:30 |
D. 3.08 Área Científica |
| 1st quarter |
Wednesday
10:30 a 12:30 |
D. 3.08 Área Científica |
| 1st quarter |
Thursday
10:30 a 12:30 |
D. 3.08 Área Científica |
| 2nd quarter |
Monday
12:30 a 14:30 |
D 3.08 (Área Científica) |
| 2nd quarter |
Wednesday
12:30 a 14:30 |
D 3.08 (Área Científica) |
| 2nd quarter |
Thursday
10:30 a 12:30 |
D 3.08 (Área Científica) |
| 2nd chance |
Tuesday
10:30 a 12:30 |
D 3.08 (Área Científica) |
| 2nd chance |
Wednesday
10:30 a 12:30 |
D 3.08 (Área Científica) |
| 2nd chance |
Thursday
10:30 a 12:30 |
D 3.08 (Área Científica) |
Directed or codirected by current teacher since 2013 year.
| Acceleration of a method for indentification of allele-specific methylation regions on multicore clusters |
| Analysis of Multi-Armed Bandit algorithm in a case of computing distribution through an IOT environment |
| Comparative study of data analysis made between using python and Power Query for integration in Power Bi |
| Deployment of a test cluster reusing HPC resources |
| Development of a parallel method for long tandem repeats discovery on distributed-memory systems |
| Development of parallel algorithms for 'Furthest Neighbor Search' |
| Dynamic Vision and Learning applied to wild animal census |
| Extraction and structuring of information from CVs |
| Is it posible to predict a Stock Price with the Deep Learning? |
| Parallel 3D convolution |
| Parallel construction of databases for RNA interaction prediction |
| Prediction of a football game and expected goals |
| A parallel tool for the identification of differentially methylated regions in genomic analyses |
| Acceleration of a feature selection algorithm for GPUs |
| Acceleration of an online feature selection method in Big Data environments |
| Automatic classification of clients reports with Natural Language Processing |
| pRIblast: a high efficient parallel application for RNA-RNA interaction prediction |
| Training parallelization for natural language processing deep neural networks on distributed platforms with multicore processors and GPUs |
| Development of a tool for quality control of genetic sequences in BigData environments |
| Parallelization of ARACNe, an algorithm for the reconstruction of gene regulatory retworks. |
Select merit type and year to query research merits.
Arquitecturas, Frameworks y Aplicaciones de la Computación de Altas Prestaciones
| Funding entity | Ministerio de Ciencia e Innovación |
| Main researches | TOURIÑO DOMÍNGUEZ JUAN (IP1) / RODRIGUEZ ÁLVAREZ GABRIEL (IP2) |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/09/2023 to 31/08/2026 |
Algoritmos de selección de características verdes y rápidos
| Funding entity | Ministerio de Ciencia e Innovación |
| Main researches | Verónica Bolón Canedo |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/12/2022 to 30/11/2024 |
AXUDAS PARA A CONSOLIDACIÓN E ESTRUTURACIÓN DE UNIDADES DE INVESTIGACIÓN COMPETITIVAS.GRC 2021
| Funding entity | Consellería de Cultura, Educación e Ordenación Universitaria |
| Main researches | Juan Touriño Domínguez |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2021 to 20/11/2024 |
Desafíos Actuales en HPC: Arquitecturas, Software y Aplicaciones
| Funding entity | Ministerio de Ciencia e Innovación |
| Main researches | Touriño Dominguez, Juan e Doallo Biempica, Ramón |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/06/2020 to 31/05/2023 |
Optimización de métodos de selección de características basados en información mutua para arquitecturas hardware no convencionales (SC-IM-HW)
| Funding entity | Centro de Investigación en Tecnoloxías da Información e as Comunicacións (CITIC) |
| Main researches | Jorge González Domínguez |
| Type | Proyecto Otros Programas |
| Dates | From 01/07/2018 to 30/09/2019 |
Axudas para a consolidación e estruturación de unidades de investigación competitivas-REDES. Red de Tecnologías Cloud y Big Data para HPC (II)
| Funding entity | Consellería de Cultura, Educación e Ordenación Universitaria |
| Main researches | JUAN TOURIÑO DOMÍNGUEZ |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2017 to 31/12/2018 |
Red de Computación de Altas Prestaciones en Arquitecturas Heterogéneas (CAPAP-H6)
| Funding entity | Ministerio de Economía y Competitividad |
| Main researches | Diego R. Llanos Ferraris |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/07/2017 to 30/06/2019 |
Consolidación y Estructuración de Unidades de Investigación Competitivas: Grupo de Arquitectura de Computadores de la Universidad de A Coruña
| Funding entity | Consellería de Cultura, Educación e Ordenación Universitaria |
| Main researches | Juan Touriño Domínguez |
| Type | Proyecto Programas Autonomicos |
| Dates | From 25/10/2017 to 31/12/2020 |
High Performance and Embedded Architecture and Compilation, HiPEAC-5
| Funding entity | Union Europea |
| Main researches | Koen De Bosschere |
| Type | Proyecto UE |
| Dates | From 01/12/2017 to 29/02/2020 |
High-Performance and Embedded Architecture and Compilation, HiPEAC-4
| Funding entity | Union Europea |
| Main researches | Koen De Bosschere |
| Type | Proyecto UE |
| Dates | From 01/01/2016 to 28/02/2018 |
Axudas para a acreditación, estruturación e mellora de centros de investigación singulares e agrupacións estratéxicas consolidadas do Sistema universitario de Galicia, cofinanciadas polo Fondo Europeo de Desenvolvemento Rexional (Feder), no marco do programa operativo Feder Galicia 2014-2020
| Funding entity | Consellería de Cultura, Educación e Ordenación Universitaria |
| Main researches | Manuel F. González Penedo |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2016 to 30/11/2019 |
NUEVOS DESAFIOS EN COMPUTACION DE ALTAS PRESTACIONES: DESDE ARQUITECTURAS HASTA APLICACIONES (II)
| Funding entity | Ministerio de Economía y Competitividad (MINECO) |
| Main researches | Ramón Doallo Biempica, Juan Touriño Domínguez |
| Type | Proyecto Programas Nacionales |
| Dates | From 30/12/2016 to 29/12/2019 |
Red de Computación de Altas Prestaciones en Arquitecturas Heterogéneas (CAPAP-H5)
| Funding entity | Ministerio de Economía y Competitividad |
| Main researches | Arturo González Escribano |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/01/2015 to 31/12/2015 |
Network for Sustainable Ultrascale Computing (NESUS)
| Funding entity | Union Europea |
| Main researches | Jesús Carretero Pérez |
| Type | Proyecto UE |
| Dates | From 28/03/2014 to 27/03/2018 |
Nuevos Desafíos en Computación de Altas Prestaciones: desde Arquitecturas hasta Aplicaciones
| Funding entity | Ministerio de Economía y Competitividad |
| Main researches | Ramón Doallo Biempica y Juan Touriño Domínguez |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/01/2014 to 31/12/2017 |
Red de Tecnologías Cloud y Big Data para HPC
| Funding entity | Xunta de Galicia |
| Main researches | Juan Touriño Domínguez |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2014 to 31/12/2015 |
Consolidación y Estructuración de Unidades de Investigación Competitivas: Grupo de Arquitectura de Computadores de la Universidad de A Coruña (Grupo de Referencia Competitiva)
| Funding entity | Xunta de Galicia |
| Main researches | Ramón Doallo Biempica |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2013 to 31/12/2016 |
Ayudas para la consolidación y estructuración de unidades de investigación competitiva. Modalidad de agrupaciones estratégicas (CITIC)
| Funding entity | Xunta de Galicia |
| Main researches | Ricardo Cao Abad |
| Type | Proyecto Programas Autonomicos |
| Dates | From 01/01/2012 to 31/12/2013 |
High-Performance Embedded Architectures and Compilation Network of Excellence, HiPEAC-3 NoE
| Funding entity | Union Europea |
| Main researches | Koen De Bosschere |
| Type | Proyecto UE |
| Dates | From 01/02/2012 to 31/01/2016 |
Red de Computación de Altas Prestaciones sobre Arquitecturas Paralelas Heterogéneas (CAPAP-H4)
| Funding entity | Ministerio de Economía y Competitividad |
| Main researches | Diego R. Llanos Ferraris |
| Type | Proyecto Programas Nacionales |
| Dates | From 15/06/2012 to 25/04/2014 |
Arquitecturas, Sistemas y Herramientas para Computación de Altas Prestaciones
| Funding entity | Ministerio de Economía y Competitividad |
| Main researches | Ramón Doallo Biempica |
| Type | Proyecto Programas Nacionales |
| Dates | From 01/01/2011 to 30/06/2014 |
Open European Network for High Performance Computing on Complex Environments (ComplexHPC)
| Funding entity | Union Europea |
| Main researches | Emmanuel Jeannot |
| Type | Proyecto UE |
| Dates | From 07/05/2009 to 06/07/2013 |
pRIblast: A parallel application for IncRNA-RNA interaction prediction
| Type | Software Registrado |
| Entity | Universidade da Coruña |
| Authors | Iñaki Amatria-Barral, Jorge González Domínguez, Juan Touriño Domínguez |
| Application date | 31/03/2023 |
| Approval date | 13/10/2023 |
Parallel-FST: Feature Selection Library for Clusters
| Type | Software Registrado |
| Entity | Universidade da Coruña |
| Authors | Bieito Beceiro Fernández, Jorge González Domínguez, Juan Touriño Domínguez |
| Application date | 05/08/2022 |
| Approval date | 14/04/2023 |
PyToxo
| Type | Software Registrado |
| Entity | |
| Authors | Christian Ponte, María J. Martín, Borja González-Seoane, Jorge González Domínguez |
| Application date | 06/08/2021 |
| Approval date | 05/11/2021 |
Cuda joint mututal information. CUDA-JMI
| Type | Software Registrado |
| Entity | UDC |
| Authors | Jorge González Domínguez, Roberto R. Expósito, Verónica Bolón-Canedo |
| Application date | 06/02/2020 |
| Approval date | 22/12/2020 |
MPI3SNP
| Type | Software Registrado |
| Entity | UDC |
| Authors | María J. Martín, Jorge González Domínguez, Christian Ponte |
| Application date | 30/06/2019 |
ParBiBit
| Type | Software Registrado |
| Entity | Universidade da Coruña (UDC) |
| Authors | Jorge González Domínguez, Roberto Rey Expósito |
| Application date | 07/06/2018 |
| Approval date | 16/07/2018 |
CUBiBit
| Type | Software Registrado |
| Entity | Universidade da Coruña (UDC) |
| Authors | Jorge González Domínguez, Roberto Rey Expósito |
| Application date | 16/08/2018 |
| Approval date | 31/10/2018 |
MPICorMat
| Type | Software Registrado |
| Entity | Universidade da Coruña (UDC) |
| Authors | Jorge González Domínguez, María J. Martín |
| Application date | 27/06/2017 |
| Approval date | 14/08/2017 |
MPIGeneNet
| Type | Software Registrado |
| Entity | Universidade da Coruña (UDC) |
| Authors | Jorge González Domínguez, María J. Martín |
| Application date | 02/11/2017 |
| Approval date | 14/02/2018 |
MapReduce Duplicate Removal Tool (MarDRe)
| Type | Software Registrado |
| Entity | Universidade da Coruña (UDC) |
| Authors | Roberto Rey Expósito, Jorge Veiga Fachal, Jorge González Domínguez, Juan Touriño Domínguez |
| Application date | 02/11/2017 |
| Approval date | 14/02/2018 |
Servet Benchmark Suite
| Type | Software Registrado |
| Entity | Universidade da Coruña (UDC) |
| Authors | Jorge González Domínguez, Guillermo López Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño Domínguez |
| Application date | 07/08/2013 |
| Approval date | 09/01/2014 |
BetaGPU: Harnessing GPU power for parallelized beta distribution functions
| Authors | Alejandro Fernández-Fraga, Jorge González Domínguez, María J. Martín |
| Journal | SoftwareX Vol. 29 |
| DOI | https://doi.org/10.1016/j.so10.1016/j.softx.2024.102009ftx.2024.101666 |
Biclustering in bioinformatics using big data and High Performance Computing applications: challenges and perspectives, a review
| Authors | Aurelio López-Fernández, Francisco A. Gómez-Vela, Domingo S. Rodríguez-Baena, Fernando M. Delgado-Chaves, Jorge González Domínguez |
| Journal | JOURNAL OF SUPERCOMPUTING Vol. 81 |
| DOI | https://doi.org/10.1007/s11227-025-07563-6 |
BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction
| Authors | Roberto R. Expósito, Jorge González Domínguez |
| Journal | FUTURE GENERATION COMPUTER SYSTEMS Vol. 154 (pages 314 to 329) |
| DOI | https://doi.org/10.1016/j.future.2024.01.011 |
bioScience: A new python science library for high-performance computing bioinformatics analytics
| Authors | Aurelio López-Fernández, Francisco A. Gómez-Vela, Jorge González Domínguez, Parameshachari Bidare-Divakarachari |
| Journal | SoftwareX Vol. 26 |
| DOI | https://doi.org/10.1016/j.softx.2024.101666 |
CUDA Acceleration of MI-based Feature Selection Methods
| Authors | Bieito Beceiro Fernández, Jorge González Domínguez, Laura Morán-Fernández, Verónica Bolón-Canedo, Juan Touriño Domínguez |
| Journal | JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING Vol. 190 (pages 1 to 17) |
| DOI | https://doi.org/10.1016/j.jpdc.2024.104901 |
PARamrfinder: Detecting allele-specific DNA methylation on Multicore Clusters
| Authors | Alejandro Fernández-Fraga, Jorge González Domínguez, María J. Martín |
| Journal | JOURNAL OF SUPERCOMPUTING (pages 14573 to 14599) |
| DOI | https://doi.org/10.1007/s11227-024-05939-8 |
Considerations in the search for epistasis
| Authors | Jorge González Domínguez |
| Journal | Genome Biology Vol. 25 Num. 1 |
| DOI | https://doi.org/10.1186/s13059-024-03427-z |
pRIblast: A Highly Efficient Parallel Application for Comprehensive lncRNA-RNA Interaction Prediction
| Authors | Iñaki Amatria-Barral, Jorge González Domínguez, Juan Touriño Domínguez |
| Journal | FUTURE GENERATION COMPUTER SYSTEMS Vol. 138 (pages 270 to 279) |
| DOI | https://doi.org/10.1016/j.future.2022.08.014 |
PATO: Genome-wide Prediction of lncRNA-DNA Triple Helices
| Authors | Iñaki Amatria-Barral, Jorge González Domínguez, Juan Touriño Domínguez |
| Journal | BIOINFORMATICS Vol. 39 Num. 3 (pages 1 to 3) |
| DOI | https://doi.org/10.1093/bioinformatics/btad134 |
ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters
| Authors | Alejandro Fernández-Fraga, Jorge González Domínguez, Juan Touriño Domínguez |
| Journal | IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 20 Num. 3 (pages 2041 to 2049) |
| DOI | https://doi.org/10.1109/tcbb.2022.3230473 |
MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters
| Authors | Jorge González Domínguez, José M Martín-Martínez, Roberto Rey Expósito |
| Journal | JOURNAL OF SUPERCOMPUTING Vol. 78 (pages 4217 to 4235) |
| DOI | https://doi.org/10.1007/s11227-021-04025-7 |
A SIMD Algorithm for the Detection of Epistatic Interactions of any Order
| Authors | Christian Ponte, María J. Martín, Jorge González Domínguez |
| Journal | FUTURE GENERATION COMPUTER SYSTEMS Vol. 132 (pages 108 to 123) |
| DOI | https://doi.org/10.1016/j.future.2022.02.009 |
Evaluation of Existing Methods for High-Order Epistasis Detection
| Authors | Christian Ponte-Fernández, Jorge González Domínguez, Antonio Carvajal Rodríguez, María J. Martín |
| Journal | IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 19 Num. 2 (pages 912 to 926) |
| DOI | https://doi.org/10.1109/tcbb.2020.3030312 |
PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models
| Authors | Borja González-Seoane, Christian Ponte-Fernández, Jorge González Domínguez, María J. Martín |
| Journal | BMC BIOINFORMATICS Vol. 23 Num. 117 |
| DOI | https://doi.org/10.1186/s12859-022-04645-7 |
Parallel-FST: a Feature Selection Library for Multicore Clusters
| Authors | Bieito Beceiro Fernández, Jorge González Domínguez, Juan Touriño Domínguez |
| Journal | JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING Vol. 169 (pages 106 to 116) |
| DOI | https://doi.org/10.1016/j.jpdc.2022.06.012 |
Fiuncho: a program for any-order epistasis detection in CPU clusters
| Authors | Christian Ponte-Fernández, Jorge González Domínguez, María J. Martín |
| Journal | JOURNAL OF SUPERCOMPUTING Vol. 78 (pages 15338 to 15357) |
| DOI | https://doi.org/10.1007/s11227-022-04477-5 |
ScalaParBiBit: scaling the binary biclustering in distributed-memory systems
| Authors | Basilio B. Fraguela, Diego Andrade Canosa, Jorge González Domínguez |
| Journal | Cluster Computing Vol. 24 Num. 3 (pages 2249 to 2268) |
| DOI | https://doi.org/10.1007/s10586-021-03261-z |
Fast Search of Third-Order Epistatic Interactions on CPU and GPU Clusters
| Authors | Christian Ponte-Fernández, Jorge González Domínguez, María J. Martín |
| Journal | INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS Vol. 34 Num. 1 (pages 20 to 29) |
| DOI | https://doi.org/10.1177/1094342019852128 |
Toxo: a library for calculating penetrance tables of high-order epistasis models
| Authors | Christian Ponte-Fernández, Jorge González Domínguez, Antonio Carvajal Rodríguez, María J. Martín |
| Journal | BMC BIOINFORMATICS Vol. 21 Num. 138 |
SMusket: Spark-based DNA error correction on distributed-memory systems
| Authors | Roberto R. Expósito, Jorge González Domínguez, Juan Touriño Domínguez |
| Journal | FUTURE GENERATION COMPUTER SYSTEMS Vol. 111 (pages 698 to 713) |
| DOI | https://doi.org/10.1016/j.future.2019.10.038 |
SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets
| Authors | Roberto Rey Expósito, Roi Galego-Torreiro, Jorge González Domínguez |
| Journal | IEEE Access Vol. 8 (pages 146075 to 146084) |
| DOI | https://doi.org/10.1109/access.2020.3015016 |
Accelerating Binary Biclustering on Platforms with CUDA-enabled GPU
| Authors | Jorge González Domínguez, Roberto Rey Expósito |
| Journal | Information Sciences Vol. 496 (pages 317 to 325) |
| DOI | https://doi.org/10.1016/j.ins.2018.05.025 |
Parallel Feature Selection for Distributed-Memory Clusters
| Authors | Jorge González Domínguez, Verónica Bolón-Canedo, Freire C., Borja, Juan Touriño Domínguez |
| Journal | Information Sciences Vol. 496 (pages 399 to 409) |
| DOI | https://doi.org/10.1016/j.ins.2019.01.050 |
CUDA-JMI: Acceleration of Feature Selection on Heterogeneous Systems
| Authors | Jorge González Domínguez, Roberto R. Expósito, Verónica Bolón-Canedo |
| Journal | FUTURE GENERATION COMPUTER SYSTEMS Vol. 102 (pages 426 to 436) |
parSRA: A Framework for the Parallel Execution of Short Read Aligners on Compute Clusters
| Authors | Jorge González Domínguez, Christian Hundt, Bertil Schmidt |
| Journal | Journal of Computational Science Vol. 25 (pages 134 to 139) |
ParBiBit: Parallel tool for binary biclustering on modern distributed-memory systems
| Authors | Jorge González Domínguez, Roberto Rey Expósito |
| Journal | PLOS ONE Vol. 13 Num. 4 |
| DOI | https://doi.org/10.1371/journal.pone.0194361 |
HSRA: Hadoop-based spliced read aligner for RNA sequencing data
| Authors | Roberto Rey Expósito, Jorge González Domínguez, Juan Touriño Domínguez |
| Journal | PLOS ONE Vol. 13 Num. 7 (pages 1 to 25) |
| DOI | https://doi.org/10.1371/journal.pone.0201483 |
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters
| Authors | Jorge González Domínguez, María J. Martín |
| Journal | IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 15 Num. 5 (pages 1732 to 1737) |
| DOI | https://doi.org/10.1109/tcbb.2017.2761340 |
Accelerating Binary Biclustering on Platforms with CUDA-enabled GPU
| Authors | Jorge González Domínguez, Roberto Rey Expósito |
| Journal | Information Sciences |
MarDRe: Efficient MapReduce-based Removal of Duplicate DNA Reads in the Cloud
| Authors | Roberto Rey Expósito, Jorge Veiga Fachal, Jorge González Domínguez, Juan Touriño Domínguez |
| Journal | BIOINFORMATICS Vol. 33 Num. 17 (pages 2762 to 2764) |
Speed and Accuracy Improvement of Higher-Order Epistasis Detection on CUDA-enabled GPUs
| Authors | Daniel Jünger, Christian Hundt, Jorge González Domínguez, Bertil Schmidt |
| Journal | Cluster Computing Vol. 20 Num. 3 (pages 1899 to 1908) |
| DOI | https://doi.org/10.1007/s10586-017-0938-9 |
Parallel Definition of Tear Film Maps on Distributed-Memory Clusters for the Support of Dry Eye Diagnosis
| Authors | Jorge González Domínguez, Bea Remeseiro, María J. Martín |
| Journal | Computer Methods and Programs in Biomedicine Vol. 139 (pages 51 to 60) |
| DOI | https://doi.org/10.1016/j.cmpb.2016.10.027 |
Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures
| Authors | Jorge González Domínguez, Sabela Ramos Garea, Juan Touriño Domínguez, Bertil Schmidt |
| Journal | IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS Vol. 27 Num. 8 (pages 2329 to 2340) |
Multithreaded and Spark Parallelization of Feature Selection Filters
| Authors | Carlos Eiras-Franco, Verónica Bolón-Canedo, Sabela Ramos Garea, Jorge González Domínguez, Amparo Alonso-Betanzos, Juan Touriño Domínguez |
| Journal | Journal of Computational Science Vol. 17 (pages 609 to 619) |
MSAProbs-MPI: Parallel Multiple Sequence Aligner for Distributed-Memory Systems
| Authors | Jorge González Domínguez, Yongchao Liu, Bertil Schmidt, Juan Touriño Domínguez |
| Journal | BIOINFORMATICS Vol. 32 Num. 24 (pages 3826 to 3828) |
ParDRe: Faster Parallel Duplicated Reads Removal Tool for Sequencing Studies
| Authors | Jorge González Domínguez, Bertil Schmidt |
| Journal | BIOINFORMATICS (pages 1562 to 1564) |
| DOI | https://doi.org/10.1093/bioinformatics/btw038 |
Parallel and Scalable Short-read Alignment on Multi-core Clusters using UPC++
| Authors | Jorge González Domínguez, Bertil Schmidt, Yongchao Liu |
| Journal | PLOS ONE Vol. 11 Num. 1 (pages 1 to 15) |
| DOI | https://doi.org/10.1371/journal.pone.0145490 |
Large-Scale Genome-Wide Association Studies on a GPU Cluster Using a CUDA-Accelerated PGAS Programming Model
| Authors | Jorge González Domínguez, Jan C. Kässens, Lars Wienbrandt, Bertil Schmidt |
| Journal | INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS Vol. 29 Num. 4 (pages 506 to 510) |
| DOI | https://doi.org/10.1177/1094342015585846 |
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-accelerated Computing Systems
| Authors | Jorge González Domínguez, Lars Wienbrandt, Jan C. Kässens, David Ellinghaus, Manfred Schimmler, Bertil Schmidt |
| Journal | IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 12 Num. 5 (pages 982 to 994) |
| DOI | https://doi.org/10.1109/tcbb.2015.2389958 |
High-Speed Exhaustive 3-locus Interaction Epistasis Analysis on FPGAs
| Authors | Jan C. Kässens, Lars Wienbrandt, Jorge González Domínguez, Bertil Schmidt, Manfred Schimmler |
| Journal | Journal of Computational Science Vol. 9 (pages 131 to 136) |
| DOI | https://doi.org/10.1016/j.jocs.2015.04.030 |
GPU-Accelerated Exhaustive Search for Third-Order Epistatic Interactions in Case-Control Studies
| Authors | Jorge González Domínguez, Bertil Schmidt |
| Journal | Journal of Computational Science Vol. 8 (pages 93 to 100) |
| DOI | https://doi.org/10.1016/j.jocs.2015.04.001 |
A 2D algorithm with asymmetric workload for the UPC conjugate gradient method
| Authors | Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño Domínguez |
| Journal | JOURNAL OF SUPERCOMPUTING Vol. 70 Num. 2 (pages 816 to 829) |
| DOI | https://doi.org/10.1007/s11227-014-1300-0 |
Scalable PGAS Collective Operations in NUMA Clusters
| Authors | Damián Álvarez Mallón, Guillermo López Taboada, Carlos Teijeiro Barjas, Jorge González Domínguez, Andrés Gómez Tato, Brian Wibecan |
| Journal | Cluster Computing Vol. 17 Num. 4 (pages 1473 to 1495) |
Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform
| Authors | Roberto Rey Expósito, Guillermo López Taboada, Sabela Ramos Garea, Jorge González Domínguez, Juan Touriño Domínguez, Ramón Doallo |
| Journal | Journal of Grid Computing Vol. 11 Num. 4 (pages 613 to 631) |
| DOI | https://doi.org/10.1007/s10723-013-9250-y |
The Servet 3.0 benchmark suite: Characterization of network performance degradation
| Authors | Jorge González-Domínguez, María J. Martín, Guillermo López Taboada, Roberto Rey Expósito, Juan Touriño Domínguez |
| Journal | COMPUTERS & ELECTRICAL ENGINEERING Vol. 39 Num. 8 (pages 2483 to 2493) |
| DOI | https://doi.org/10.1016/j.compeleceng.2013.08.012 |
Performance evaluation of sparse matrix products in UPC
| Authors | Jorge González-Domínguez, Óscar García-López, Guillermo López Taboada, María J. Martín, Juan Touriño Domínguez |
| Journal | JOURNAL OF SUPERCOMPUTING Vol. 64 Num. 1 (pages 100 to 109) |
| DOI | https://doi.org/10.1007/s11227-012-0796-4 |
A Parallel Numerical Library for UPC
| Authors | Jorge González Domínguez, María J. Martín, Guillermo López Taboada, Juan Touriño Domínguez, Ramón Doallo, Andrés Gómez Tato |
| Journal | LECTURE NOTES IN COMPUTER SCIENCE Vol. 5704 (pages 630 to 641) |
Parallel Programming: Concepts and Practice
| Authors | Bertil Schmidt, Jorge González Domínguez, Christian Hundt, Moritz Schlarb |
| Publishing | Morgan Kaufmann, () |
| ISBN | 9780128498903 |
Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI
| Authors | Jorge González Domínguez |
| Book |
Multiple Sequence Alignment (Methods in Molecular Biology series) Publishing: Springer Nature Switzerland . ISBN: 978-1-0716-1035-0 |
| Pages | From 39 to 47 |
HPC Tools to Deal with Microarray Data
| Authors | Jorge González Domínguez. Roberto Rey Expósito |
| Book |
Microarray Bioinformatics Publishing: Springer. ISBN: 978-1-4939-9441-0 |
| Pages | From 227 to 243 |
High-Order Epistasis Detection in High Performance Computing Systems
| Autor | Christian Ponte Fernández |
| Director/s | Jorge González Domínguez; María José Martín Santamaría |
| Scope | Facultad de Informática |
| Qualification | Sobresaliente Cum Laude |
Applying dynamic balancing to improve the performance of MPI parallel genomics applications
39th ACM/SIGAPP Symposium on Applied Computing
International
| Authors | Alejandro Fernández-Fraga, Jorge González Domínguez, María J. Martín |
| Place | Ávila (España) |
| DOI | https://doi.org/10.1145/3605098.3635986 |
Parallel Construction of RNA Databases for Extensive lncRNA-RNA Interaction Prediction
The 38th ACM/SIGAPP Symposium on Applied Computing, SAC 2023
International
| Authors | Iñaki Amatria-Barral, Jorge González Domínguez, Juan Touriño Domínguez |
| Place | Tallin (Estonia) |
| DOI | https://doi.org/10.1145/3555776.3577772 |
Analysis of the Construction of Similarity Matrices on Multi-core and Many-core Plat- forms Using Different Similarity Metrics
19th International Conference on Computational Science (ICCS 2019)
International
| Authors | Uxía Casal, Jorge González Domínguez, María J. Martín |
| Place | Faro (Portugal) |
| DOI | https://doi.org/10.1007/978-3-030-22734-0_13 |
Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors
15th International Conference on High Performance Computing and Simulation (HPCS 2017)
International
| Authors | Christian Ponte, Jorge González Domínguez, María J. Martín |
| Place | Genoa (Italia) |
| DOI | https://doi.org/10.1109/hpcs.2017.65 |
Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters.
17th International Conference on Computational Science (ICCS 2017)
International
| Authors | Jorge González Domínguez, María J. Martín |
| Place | Zurich (Suiza) |
| DOI | https://doi.org/10.1016/j.procs.2017.05.023 |
Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs
4th International Workshop on Parallelism in Bioinformatics (PBio 2016, in conjunction with Euro-Par 2016)
International
| Authors | Daniel Jünger, Christian Hundt, Jorge González Domínguez, Bertil Schmidt |
| Place | Grenoble (Francia) |
| DOI | https://doi.org/10.1007/978-3-319-58943-5_34 |
Combining GPU and FPGA Technology for Efficient Exhaustive Interaction Analysis in GWAS
27th IEEE International Conference on Application-specific Systems, Architectures and Processors (ASAP 2016)
International
| Authors | Jan C. Kässens, Lars Wienbrandt, Manfred Schimmler, Jorge González Domínguez, Bertil Schmidt |
| Place | London (Reino Unido) |
| DOI | https://doi.org/10.1109/asap.2016.7760788 |
Acceleration of Tear Film Map Definition on Multicore Systems
16th International Conference on Computational Science (ICCS 2016)
International
| Authors | Jorge González Domínguez, Beatriz Remeseiro, María J. Martín |
| Place | San Diego, CA (Estados Unidos) |
| DOI | https://doi.org/10.1016/j.procs.2016.05.296 |
Using a CUDA-Accelerated PGAS Model on a GPU Cluster for Bioinformatics
GPU Technology Conference (GTC 2015)
International
| Authors | Jorge González Domínguez, Bertil Schmidt |
| Place | San Jose, CA (Estados Unidos) |
Faster Compressed Sparse Row (CSR)-based Sparse Matrix-Vector Multiplication using CUDA
GPU Technology Conference (GTC 2015)
International
| Authors | Yongchao Liu, Jorge González Domínguez, Bertil Schmidt |
| Place | San Jose, CA (Estados Unidos) |
The Parallel Conjugate Gradient Method using Unified Parallel C
International Conference on Computational and Mathematical Methods in Science and Engineering, CMMSE 2014
International
| Authors | Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño Domínguez |
| Organization | Univ. de Cádiz |
| Place | Rota (España) |
The Impact of Workload Strategies on a UPC-based CG
16th SIAM Conference on Parallel Processing for Scientific Computing
International
| Authors | Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño Domínguez |
| Organization | SIAM |
| Place | Portland, Oregon (Estados Unidos) |
UPC++ for Bioinformatics: A Case Study Using Genome-Wide Association Studies.
15th IEEE International Conference on Cluster Computing (Cluster 2014)
International
| Authors | Jan C. Kässens, Jorge González Domínguez, Lars Wienbrandt, Bertil Schmidt |
| Place | Madrid (España) |
| DOI | https://doi.org/10.1109/cluster.2014.6968770 |
Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors
12th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA 2014)
International
| Authors | Sandra Catalán, Jorge González Domínguez, Rafael Mayo Gual, Enrique S. Quintana-Ortí |
| Place | Milan (Italia) |
| DOI | https://doi.org/10.1109/ispa.2014.11 |
Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS
20th International Conference Euro-Par 2014 Parallel Processing
International
| Authors | Jorge González Domínguez, Bertil Schmidt, Jan C. Kässens, Lars Wienbrandt |
| Place | Porto (Portugal) |
| DOI | https://doi.org/10.1007/978-3-319-09873-9_57 |
FPGA-Based Acceleration of Detecting Statistical Epistasis in GWAS
14th International Conference on Computational Science (ICCS 2014)
International
| Authors | Lars Wienbrandt, Jan C. Kässens, Jorge González Domínguez, Bertil Schmidt, David Ellinghaus, Manfred Schimmler |
| Place | Cairns (Australia) |
| DOI | https://doi.org/10.1016/j.procs.2014.05.020 |
Servet: A Benchmark Suite for Autotuning on Multicore Clusters
24th IEEE International Parallel and Distributed Processing Symposium (IPDPS¿2010)
International
| Authors | Jorge González Domínguez, Guillermo López Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño Domínguez |
| Place | Atlanta (Estados Unidos) |
Servet: una suite de benchmarks para el soporte del autotuning en clusters de sistemas multinúcleo
XXI Jornadas de Paralelismo
National
| Authors | Jorge González Domínguez, Guillermo López Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño Domínguez |
| Place | Valencia (España) |
Una Biblioteca Numérica Paralela para UPC
XX Jornadas de Paralelismo
National
| Authors | Jorge González Domínguez, María J. Martín, Guillermo López Taboada, Juan Touriño Domínguez, Ramón Doallo, Andrés Gómez Tato |
| Place | Coruña, A (España) |
Academic or management positions held by teacher.